No. words: 1611; after pruning: 1571


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:986)  600  0.48 0.16 0.16  UCW001F_A07_BE591275Ld01P002G04G101F1_049.ab1      129   752 (0)  C UCW001R_A07_BE591275Ld01P002G04G101R1_049.ab1   (0)   859   236 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1    UCW001F_A07_BE591275Ld01P002G04G101F1_049.ab1     1 
  464  C UCW001R_A07_BE591275Ld01P002G04G101R1_049.ab1   525 
  476    UCW001F_A07_BE591275Ld01P002G04G101F1_049.ab1   476 
  480  C UCW001R_A07_BE591275Ld01P002G04G101R1_049.ab1   509 
  484    UCW001F_A07_BE591275Ld01P002G04G101F1_049.ab1   484 
  492  C UCW001R_A07_BE591275Ld01P002G04G101R1_049.ab1   497 
  520    UCW001F_A07_BE591275Ld01P002G04G101F1_049.ab1   520 
  524  C UCW001R_A07_BE591275Ld01P002G04G101R1_049.ab1   465 
  552    UCW001F_A07_BE591275Ld01P002G04G101F1_049.ab1   552 
  560  C UCW001R_A07_BE591275Ld01P002G04G101R1_049.ab1   429 
Contig length: old 987, new 988

Contig length: old 988, new 988
New start: 0 
S Change at: 589; seg lengths: entry 1, contig 1