No. words: 1613; after pruning: 1573


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:1111)  475  0.40 0.40 0.20  UCW001F_C07_BE591275Ld03P002G04G101F1_050.ab1      373   872 (0)  C UCW001R_C07_BE591275Ld03P002G04G101R1_050.ab1   (0)   741   241 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1    UCW001F_C07_BE591275Ld03P002G04G101F1_050.ab1     1 
  532  C UCW001R_C07_BE591275Ld03P002G04G101R1_050.ab1   582 
  544    UCW001F_C07_BE591275Ld03P002G04G101F1_050.ab1   544 
  556  C UCW001R_C07_BE591275Ld03P002G04G101R1_050.ab1   558 
Contig length: old 1112, new 1113

Contig length: old 1113, new 1113
New start: 0