No. words: 1523; after pruning: 1483


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:1059)  443  0.22 0.43 0.22  UCW001F_H07_BE591275Ld08P002G04G101F1_060.ab1      347   808 (0)  C UCW001R_H07_BE591275Ld08P002G04G101R1_060.ab1   (0)   715   253 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1    UCW001F_H07_BE591275Ld08P002G04G101F1_060.ab1     1 
  508  C UCW001R_H07_BE591275Ld08P002G04G101R1_060.ab1   554 
  516    UCW001F_H07_BE591275Ld08P002G04G101F1_060.ab1   516 
  536  C UCW001R_H07_BE591275Ld08P002G04G101R1_060.ab1   526 
Contig length: old 1060, new 1061

Contig length: old 1061, new 1061
New start: 0