No. words: 1016; after pruning: 990


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.0 (1,1:815)  188  1.50 0.00 0.00  UCW033_E12_BE591275Sn30P001G09P022F051R1_088.ab1      277   476 (0)  C UCW034_E12_BE591275Sn30P001G09P022F051F1_088.ab1   (0)   540   341 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1    UCW033_E12_BE591275Sn30P001G09P022F051R1_088.ab1     1 
  308  C UCW034_E12_BE591275Sn30P001G09P022F051F1_088.ab1   509 
  312    UCW033_E12_BE591275Sn30P001G09P022F051R1_088.ab1   312 
  376  C UCW034_E12_BE591275Sn30P001G09P022F051F1_088.ab1   441 
  380    UCW033_E12_BE591275Sn30P001G09P022F051R1_088.ab1   380 
  400  C UCW034_E12_BE591275Sn30P001G09P022F051F1_088.ab1   417 
  404    UCW033_E12_BE591275Sn30P001G09P022F051R1_088.ab1   404 
  413  C UCW034_E12_BE591275Sn30P001G09P022F051F1_088.ab1   404 
  417    UCW033_E12_BE591275Sn30P001G09P022F051R1_088.ab1   417 
  421  C UCW034_E12_BE591275Sn30P001G09P022F051F1_088.ab1   396 
  439    UCW033_E12_BE591275Sn30P001G09P022F051R1_088.ab1   439 
  443  C UCW034_E12_BE591275Sn30P001G09P022F051F1_088.ab1   374 
  447    UCW033_E12_BE591275Sn30P001G09P022F051R1_088.ab1   447 
  451  C UCW034_E12_BE591275Sn30P001G09P022F051F1_088.ab1   366 
  459    UCW033_E12_BE591275Sn30P001G09P022F051R1_088.ab1   459 
  468  C UCW034_E12_BE591275Sn30P001G09P022F051F1_088.ab1   349 
Contig length: old 816, new 816

Contig length: old 816, new 816
New start: 0