No. words: 1839; after pruning: 1813


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 18.4 (1,1:954)  830  0.00 0.00 0.00  UCW033_C08_BE591275Ta11P001G09P022D051R1_060.ab1        2   848 (0)  C UCW034_C08_BE591275Ta11P001G09P022D051F1_060.ab1   (37)   954   108 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  426 nodes

 215 str. conn. components

Path
    1  C UCW034_C08_BE591275Ta11P001G09P022D051F1_060.ab1   991 
   41    UCW033_C08_BE591275Ta11P001G09P022D051R1_060.ab1     5 
   49  C UCW034_C08_BE591275Ta11P001G09P022D051F1_060.ab1   943 
   53    UCW033_C08_BE591275Ta11P001G09P022D051R1_060.ab1    17 
  577  C UCW034_C08_BE591275Ta11P001G09P022D051F1_060.ab1   415 
Contig length: old 991, new 991

Contig length: old 991, new 991
New start: 0