No. words: 1538; after pruning: 1512


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 12.2 (1,1:972)  552  0.00 0.00 0.00  UCW033_B10_BE591275Ta12P001G09P022F051R1_078.ab1       77   636 (0)  C UCW034_B10_BE591275Ta12P001G09P022F051F1_078.ab1   (5)   897   338 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1    UCW033_B10_BE591275Ta12P001G09P022F051R1_078.ab1     1 
   80  C UCW034_B10_BE591275Ta12P001G09P022F051F1_078.ab1   894 
   88    UCW033_B10_BE591275Ta12P001G09P022F051R1_078.ab1    88 
  244  C UCW034_B10_BE591275Ta12P001G09P022F051F1_078.ab1   730 
  252    UCW033_B10_BE591275Ta12P001G09P022F051R1_078.ab1   252 
  296  C UCW034_B10_BE591275Ta12P001G09P022F051F1_078.ab1   678 
  388    UCW033_B10_BE591275Ta12P001G09P022F051R1_078.ab1   388 
  392  C UCW034_B10_BE591275Ta12P001G09P022F051F1_078.ab1   582 
Contig length: old 973, new 973

Contig length: old 973, new 973
New start: 0