No. words: 1941; after pruning: 1915


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 18.7 (1,1:959)  917  0.21 0.00 0.21  UCW033_G08_BE591275Ta15P001G09P022D051R1_052.ab1        1   956 (4)  C UCW034_G08_BE591275Ta15P001G09P022D051F1_052.ab1   (22)   959     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  468 nodes

 236 str. conn. components

Path
    1  C UCW034_G08_BE591275Ta15P001G09P022D051F1_052.ab1   981 
   26    UCW033_G08_BE591275Ta15P001G09P022D051R1_052.ab1     4 
  650  C UCW034_G08_BE591275Ta15P001G09P022D051F1_052.ab1   332 
Contig length: old 981, new 981

Contig length: old 981, new 983
New start: 0 
I Change at: 948; seg lengths: entry 1, contig 0
I Change at: 966; seg lengths: entry 1, contig 0