No. words: 1412; after pruning: 1386


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:959)  444  0.00 0.00 0.00  UCW033_C11_BE591275Ta21P001G09P022F051R1_091.ab1      273   724 (0)  C UCW034_C11_BE591275Ta21P001G09P022F051F1_091.ab1   (0)   688   237 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1    UCW033_C11_BE591275Ta21P001G09P022F051R1_091.ab1     1 
  480  C UCW034_C11_BE591275Ta21P001G09P022F051F1_091.ab1   481 
  488    UCW033_C11_BE591275Ta21P001G09P022F051R1_091.ab1   488 
  500  C UCW034_C11_BE591275Ta21P001G09P022F051F1_091.ab1   461 
  548    UCW033_C11_BE591275Ta21P001G09P022F051R1_091.ab1   548 
  552  C UCW034_C11_BE591275Ta21P001G09P022F051F1_091.ab1   409 
  556    UCW033_C11_BE591275Ta21P001G09P022F051R1_091.ab1   556 
  560  C UCW034_C11_BE591275Ta21P001G09P022F051F1_091.ab1   401 
Contig length: old 960, new 960

Contig length: old 960, new 960
New start: 0