No. words: 1586; after pruning: 1546


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:1233)  328  0.28 0.28 0.28  UCW002F_B08_BE636795As01P002C06C121F1_061.ab1      429   780 (0)  C UCW002R_B08_BE636795As01P002C06C121R1_061.ab1   (0)   806   455 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1    UCW002F_B08_BE636795As01P002C06C121F1_061.ab1     1 
  593  C UCW002R_B08_BE636795As01P002C06C121R1_061.ab1   642 
  605    UCW002F_B08_BE636795As01P002C06C121F1_061.ab1   605 
  621  C UCW002R_B08_BE636795As01P002C06C121R1_061.ab1   614 
  637    UCW002F_B08_BE636795As01P002C06C121F1_061.ab1   637 
  641  C UCW002R_B08_BE636795As01P002C06C121R1_061.ab1   594 
Contig length: old 1234, new 1234

Contig length: old 1234, new 1234
New start: 0