No. words: 3591; after pruning: 3525


Histogram of relative pair offsets, for read pairs with multiple alignments:
99    14

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.7 (1,1:12)  847  1.01 0.00 0.00  UCW018R_E06_BE636795As01P014C06P014C121R1_040.ab1       13   906 (0)    UCW030R_D09_BE636795As01P014C06P014C121R1_073.ab1        1   894 (1) *
Merge:(0)    0    0.0 18.4 (1,1:15)  831  0.35 0.00 0.12  UCW018F_E06_BE636795As01P014C06P014C121F1_040.ab1       16   883 (0)    UCW030F_D09_BE636795As01P014C06P014C121F1_073.ab1        1   867 (40) *
Merge:(0)    0    0.0 11.3 (2,2:1269)  491  0.00 0.19 0.19  UCW018F_E06_BE636795As01P014C06P014C121F1_040.ab1      365   883 (0)  C UCW018R_E06_BE636795As01P014C06P014C121R1_040.ab1   (0)   906   388 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       4 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1852 nodes

 564 str. conn. components

Path
    1    UCW018F_E06_BE636795As01P014C06P014C121F1_040.ab1     1 
   95    UCW030F_D09_BE636795As01P014C06P014C121F1_073.ab1    80 
   99    UCW018F_E06_BE636795As01P014C06P014C121F1_040.ab1    99 
  111    UCW030F_D09_BE636795As01P014C06P014C121F1_073.ab1    96 
  115    UCW018F_E06_BE636795As01P014C06P014C121F1_040.ab1   115 
  525    UCW030F_D09_BE636795As01P014C06P014C121F1_073.ab1   510 
  637  C UCW018R_E06_BE636795As01P014C06P014C121R1_040.ab1   634 
 1191  C UCW030R_D09_BE636795As01P014C06P014C121R1_073.ab1    68 
 1199  C UCW018R_E06_BE636795As01P014C06P014C121R1_040.ab1    72 
 1223  C UCW030R_D09_BE636795As01P014C06P014C121R1_073.ab1    36 
 1227  C UCW018R_E06_BE636795As01P014C06P014C121R1_040.ab1    44 
 1251  C UCW030R_D09_BE636795As01P014C06P014C121R1_073.ab1     8 
 1255  C UCW018R_E06_BE636795As01P014C06P014C121R1_040.ab1    16 
Contig length: old 1270, new 1270

Contig length: old 1270, new 1270
New start: 0