No. words: 3544; after pruning: 3492


Histogram of relative pair offsets, for read pairs with multiple alignments:
99    14

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 19.1 (1,1:-1)  871  0.22 0.00 0.00  UCW018F_F06_BE636795As02P014C06P014C121F1_038.ab1        1   900 (0)    UCW030F_D10_BE636795As02P014C06P014C121F1_074.ab1        2   901 (0) *
Merge:(0)    0    0.0 18.4 (1,1:0)  808  0.00 0.00 0.00  UCW018R_F06_BE636795As02P014C06P014C121R1_038.ab1        1   827 (89)    UCW030R_D10_BE636795As02P014C06P014C121R1_074.ab1        1   827 (0) *
Merge:(0)    0    0.0 11.1 (2,2:1269)  521  0.00 0.00 0.18  UCW018F_F06_BE636795As02P014C06P014C121F1_038.ab1      354   900 (0)  C UCW018R_F06_BE636795As02P014C06P014C121R1_038.ab1   (0)   916   371 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       4 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1842 nodes

 532 str. conn. components

Path
    1    UCW030F_D10_BE636795As02P014C06P014C121F1_074.ab1     1 
   42    UCW018F_F06_BE636795As02P014C06P014C121F1_038.ab1    41 
   50    UCW030F_D10_BE636795As02P014C06P014C121F1_074.ab1    50 
   58    UCW018F_F06_BE636795As02P014C06P014C121F1_038.ab1    57 
   86    UCW030F_D10_BE636795As02P014C06P014C121F1_074.ab1    86 
   98    UCW018F_F06_BE636795As02P014C06P014C121F1_038.ab1    97 
  102    UCW030F_D10_BE636795As02P014C06P014C121F1_074.ab1   102 
  114    UCW018F_F06_BE636795As02P014C06P014C121F1_038.ab1   113 
  134    UCW030F_D10_BE636795As02P014C06P014C121F1_074.ab1   134 
  162    UCW018F_F06_BE636795As02P014C06P014C121F1_038.ab1   161 
  526    UCW030F_D10_BE636795As02P014C06P014C121F1_074.ab1   526 
  639  C UCW018R_F06_BE636795As02P014C06P014C121R1_038.ab1   633 
 1164  C UCW030R_D10_BE636795As02P014C06P014C121R1_074.ab1   108 
 1188  C UCW018R_F06_BE636795As02P014C06P014C121R1_038.ab1    84 
 1208  C UCW030R_D10_BE636795As02P014C06P014C121R1_074.ab1    64 
 1216  C UCW018R_F06_BE636795As02P014C06P014C121R1_038.ab1    56 
 1248  C UCW030R_D10_BE636795As02P014C06P014C121R1_074.ab1    24 
 1264  C UCW018R_F06_BE636795As02P014C06P014C121R1_038.ab1     8 
Contig length: old 1271, new 1271

Contig length: old 1271, new 1271
New start: 0