No. words: 1456; after pruning: 1430


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:1100)  339  0.00 0.00 0.00  UCW002F_C08_BE636795At01P002C06C121F1_054.ab1      408   762 (0)  C UCW002R_C08_BE636795At01P002C06C121R1_054.ab1   (0)   694   340 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1    UCW002F_C08_BE636795At01P002C06C121F1_054.ab1     1 
  491  C UCW002R_C08_BE636795At01P002C06C121R1_054.ab1   611 
  495    UCW002F_C08_BE636795At01P002C06C121F1_054.ab1   495 
  511  C UCW002R_C08_BE636795At01P002C06C121R1_054.ab1   591 
  523    UCW002F_C08_BE636795At01P002C06C121F1_054.ab1   523 
  563  C UCW002R_C08_BE636795At01P002C06C121R1_054.ab1   539 
  583    UCW002F_C08_BE636795At01P002C06C121F1_054.ab1   583 
  587  C UCW002R_C08_BE636795At01P002C06C121R1_054.ab1   515 
Contig length: old 1101, new 1101

Contig length: old 1101, new 1101
New start: 0