No. words: 3342; after pruning: 3276 Histogram of relative pair offsets, for read pairs with multiple alignments: 99 6 Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 4 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 0 0.0 12.1 (1,1:1120) 522 0.00 0.00 0.00 UCW030F_D11_BE636795At01P014C06P014C121F1_089.ab1 303 847 (0) C UCW030R_D11_BE636795At01P014C06P014C121R1_089.ab1 (0) 819 275 * Merge:(0) 0 0.0 7.2 (1,1:1259) 380 0.96 0.24 0.24 UCW018F_G06_BE636795At01P014C06P014C121F1_036.ab1 418 833 (0) C UCW018R_G06_BE636795At01P014C06P014C121R1_036.ab1 (0) 843 428 * Pass: 3 #reads #contigs (not counting singlets) 2 2 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 2 0 Gap # merges # failures size 0 2 0 Offset 0 2 Pass 4 Gap Score Pass: 4 #reads #contigs (not counting singlets) 2 2 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Read equivalence class histogram: 2 2 Chimera merges: Contig 2: 274 nodes 139 str. conn. components Path 1 UCW030F_D11_BE636795At01P014C06P014C121F1_089.ab1 1 610 C UCW030R_D11_BE636795At01P014C06P014C121R1_089.ab1 512 Contig length: old 1121, new 1121 Contig 1: 192 nodes 98 str. conn. components Path 1 UCW018F_G06_BE636795At01P014C06P014C121F1_036.ab1 1 613 C UCW018R_G06_BE636795At01P014C06P014C121R1_036.ab1 648 621 UCW018F_G06_BE636795At01P014C06P014C121F1_036.ab1 621 625 C UCW018R_G06_BE636795At01P014C06P014C121R1_036.ab1 636 633 UCW018F_G06_BE636795At01P014C06P014C121F1_036.ab1 633 641 C UCW018R_G06_BE636795At01P014C06P014C121R1_036.ab1 620 Contig length: old 1260, new 1260 Contig length: old 1121, new 1121 New start: 0 Contig length: old 1260, new 1260 New start: 0