No. words: 1551; after pruning: 1511


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:1125)  399  0.24 0.24 0.00  UCW002F_D08_BE636795At02P002C06C121F1_062.ab1      378   801 (0)  C UCW002R_D08_BE636795At02P002C06C121R1_062.ab1   (0)   750   326 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1    UCW002F_D08_BE636795At02P002C06C121F1_062.ab1     1 
  526  C UCW002R_D08_BE636795At02P002C06C121R1_062.ab1   602 
  542    UCW002F_D08_BE636795At02P002C06C121F1_062.ab1   542 
  546  C UCW002R_D08_BE636795At02P002C06C121R1_062.ab1   582 
  550    UCW002F_D08_BE636795At02P002C06C121F1_062.ab1   550 
  586  C UCW002R_D08_BE636795At02P002C06C121R1_062.ab1   542 
Contig length: old 1126, new 1127

Contig length: old 1127, new 1127
New start: 0