No. words: 1538; after pruning: 1512


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.6 (1,1:1437)   90  2.00 0.00 0.00  UCW002F_A07_BE636795Ld01P002C06C121F1_049.ab1      746   845 (0)  C UCW002R_A07_BE636795Ld01P002C06C121R1_049.ab1   (0)   693   594 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  48 nodes

 26 str. conn. components

Path
    1    UCW002F_A07_BE636795Ld01P002C06C121F1_049.ab1     1 
  749  C UCW002R_A07_BE636795Ld01P002C06C121R1_049.ab1   690 
  825    UCW002F_A07_BE636795Ld01P002C06C121F1_049.ab1   825 
  829  C UCW002R_A07_BE636795Ld01P002C06C121R1_049.ab1   610 
Contig length: old 1438, new 1438

Contig length: old 1438, new 1438
New start: 0