No. words: 1672; after pruning: 1618


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.5 (1,1:1465)  197  1.46 0.00 0.00  UCW018F_A05_BE636795Ld01P014C06P014C121F1_047.ab1      601   806 (0)  C UCW018R_A05_BE636795Ld01P014C06P014C121R1_047.ab1   (0)   866   661 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  98 nodes

 51 str. conn. components

Path
    1    UCW018F_A05_BE636795Ld01P014C06P014C121F1_047.ab1     1 
  656  C UCW018R_A05_BE636795Ld01P014C06P014C121R1_047.ab1   811 
  660    UCW018F_A05_BE636795Ld01P014C06P014C121F1_047.ab1   660 
  676  C UCW018R_A05_BE636795Ld01P014C06P014C121R1_047.ab1   791 
  684    UCW018F_A05_BE636795Ld01P014C06P014C121F1_047.ab1   684 
  703  C UCW018R_A05_BE636795Ld01P014C06P014C121R1_047.ab1   764 
  715    UCW018F_A05_BE636795Ld01P014C06P014C121F1_047.ab1   715 
  719  C UCW018R_A05_BE636795Ld01P014C06P014C121R1_047.ab1   748 
  755    UCW018F_A05_BE636795Ld01P014C06P014C121F1_047.ab1   755 
  765  C UCW018R_A05_BE636795Ld01P014C06P014C121R1_047.ab1   702 
Contig length: old 1466, new 1466

Contig length: old 1466, new 1466
New start: 0