No. words: 1672; after pruning: 1632


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.1 (1,1:1437)  228  0.43 0.00 0.00  UCW002F_B07_BE636795Ld02P002C06C121F1_057.ab1      585   818 (0)  C UCW002R_B07_BE636795Ld02P002C06C121R1_057.ab1   (0)   854   621 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  116 nodes

 60 str. conn. components

Path
    1    UCW002F_B07_BE636795Ld02P002C06C121F1_057.ab1     1 
  692  C UCW002R_B07_BE636795Ld02P002C06C121R1_057.ab1   747 
  700    UCW002F_B07_BE636795Ld02P002C06C121F1_057.ab1   700 
  704  C UCW002R_B07_BE636795Ld02P002C06C121R1_057.ab1   735 
  712    UCW002F_B07_BE636795Ld02P002C06C121F1_057.ab1   712 
  716  C UCW002R_B07_BE636795Ld02P002C06C121R1_057.ab1   723 
  720    UCW002F_B07_BE636795Ld02P002C06C121F1_057.ab1   720 
  728  C UCW002R_B07_BE636795Ld02P002C06C121R1_057.ab1   711 
  736    UCW002F_B07_BE636795Ld02P002C06C121F1_057.ab1   736 
  747  C UCW002R_B07_BE636795Ld02P002C06C121R1_057.ab1   692 
Contig length: old 1438, new 1438

Contig length: old 1438, new 1438
New start: 0