No. words: 1547; after pruning: 1507


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 1.5 (1,1:1433)   88  3.57 0.89 0.89  UCW002F_C07_BE636795Ld03P002C06C121F1_050.ab1      654   765 (0)  C UCW002R_C07_BE636795Ld03P002C06C121R1_050.ab1   (0)   782   671 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  42 nodes

 23 str. conn. components

Path
    1    UCW002F_C07_BE636795Ld03P002C06C121F1_050.ab1     1 
  686  C UCW002R_C07_BE636795Ld03P002C06C121R1_050.ab1   750 
  690    UCW002F_C07_BE636795Ld03P002C06C121F1_050.ab1   690 
  700  C UCW002R_C07_BE636795Ld03P002C06C121R1_050.ab1   736 
  733    UCW002F_C07_BE636795Ld03P002C06C121F1_050.ab1   733 
  745  C UCW002R_C07_BE636795Ld03P002C06C121R1_050.ab1   691 
Contig length: old 1434, new 1435

Contig length: old 1435, new 1435
New start: 0 
S Change at: 595; seg lengths: entry 1, contig 1