No. words: 1599; after pruning: 1573


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 2.5 (1,1:1437)  140  1.25 0.62 0.62  UCW002F_E07_BE636795Ld05P002C06C121F1_051.ab1      654   813 (0)  C UCW002R_E07_BE636795Ld05P002C06C121R1_051.ab1   (0)   786   627 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  66 nodes

 35 str. conn. components

Path
    1    UCW002F_E07_BE636795Ld05P002C06C121F1_051.ab1     1 
  689  C UCW002R_E07_BE636795Ld05P002C06C121R1_051.ab1   751 
  693    UCW002F_E07_BE636795Ld05P002C06C121F1_051.ab1   693 
  701  C UCW002R_E07_BE636795Ld05P002C06C121R1_051.ab1   739 
  735    UCW002F_E07_BE636795Ld05P002C06C121F1_051.ab1   735 
  748  C UCW002R_E07_BE636795Ld05P002C06C121R1_051.ab1   692 
Contig length: old 1438, new 1439

Contig length: old 1439, new 1439
New start: 0