No. words: 1462; after pruning: 1436


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.4 (1,1:1439)   22  0.00 0.00 0.00  UCW002F_G07_BE636795Ld07P002C06C121F1_052.ab1      747   768 (0)  C UCW002R_G07_BE636795Ld07P002C06C121R1_052.ab1   (0)   694   673 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  12 nodes

 8 str. conn. components

Path
    1    UCW002F_G07_BE636795Ld07P002C06C121F1_052.ab1     1 
  750  C UCW002R_G07_BE636795Ld07P002C06C121R1_052.ab1   691 
Contig length: old 1440, new 1440

Contig length: old 1440, new 1440
New start: 0