No. words: 1606; after pruning: 1566


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.5 (1,1:1439)  157  1.20 0.00 0.00  UCW018F_G05_BE636795Ld07P014C06P014C121F1_035.ab1      658   823 (0)  C UCW018R_G05_BE636795Ld07P014C06P014C121R1_035.ab1   (0)   783   618 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  72 nodes

 38 str. conn. components

Path
    1    UCW018F_G05_BE636795Ld07P014C06P014C121F1_035.ab1     1 
  685  C UCW018R_G05_BE636795Ld07P014C06P014C121R1_035.ab1   756 
  689    UCW018F_G05_BE636795Ld07P014C06P014C121F1_035.ab1   689 
  705  C UCW018R_G05_BE636795Ld07P014C06P014C121R1_035.ab1   736 
  717    UCW018F_G05_BE636795Ld07P014C06P014C121F1_035.ab1   717 
  721  C UCW018R_G05_BE636795Ld07P014C06P014C121R1_035.ab1   720 
Contig length: old 1440, new 1440

Contig length: old 1440, new 1440
New start: 0 
S Change at: 746; seg lengths: entry 1, contig 1