No. words: 1654; after pruning: 1628


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.3 (1,1:1438)  193  1.40 0.47 0.00  UCW018F_H05_BE636795Ld08P014C06P014C121F1_033.ab1      680   893 (0)  C UCW018R_H05_BE636795Ld08P014C06P014C121R1_033.ab1   (0)   761   547 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  98 nodes

 51 str. conn. components

Path
    1    UCW018F_H05_BE636795Ld08P014C06P014C121F1_033.ab1     1 
  711  C UCW018R_H05_BE636795Ld08P014C06P014C121R1_033.ab1   730 
  715    UCW018F_H05_BE636795Ld08P014C06P014C121F1_033.ab1   715 
  735  C UCW018R_H05_BE636795Ld08P014C06P014C121R1_033.ab1   706 
  739    UCW018F_H05_BE636795Ld08P014C06P014C121F1_033.ab1   739 
  764  C UCW018R_H05_BE636795Ld08P014C06P014C121R1_033.ab1   677 
  788    UCW018F_H05_BE636795Ld08P014C06P014C121F1_033.ab1   788 
  796  C UCW018R_H05_BE636795Ld08P014C06P014C121R1_033.ab1   645 
  816    UCW018F_H05_BE636795Ld08P014C06P014C121F1_033.ab1   816 
  820  C UCW018R_H05_BE636795Ld08P014C06P014C121R1_033.ab1   621 
Contig length: old 1439, new 1440

Contig length: old 1440, new 1440
New start: 0