No. words: 1750; after pruning: 1710


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.5 (1,1:1461)  271  0.69 0.35 0.35  UCW018F_A06_BE636795Ld09P014C06P014C121F1_048.ab1      567   854 (0)  C UCW018R_A06_BE636795Ld09P014C06P014C121R1_048.ab1   (0)   896   609 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1    UCW018F_A06_BE636795Ld09P014C06P014C121F1_048.ab1     1 
  675  C UCW018R_A06_BE636795Ld09P014C06P014C121R1_048.ab1   788 
  679    UCW018F_A06_BE636795Ld09P014C06P014C121F1_048.ab1   679 
  703  C UCW018R_A06_BE636795Ld09P014C06P014C121R1_048.ab1   760 
  711    UCW018F_A06_BE636795Ld09P014C06P014C121F1_048.ab1   711 
  719  C UCW018R_A06_BE636795Ld09P014C06P014C121R1_048.ab1   744 
  735    UCW018F_A06_BE636795Ld09P014C06P014C121F1_048.ab1   735 
  739  C UCW018R_A06_BE636795Ld09P014C06P014C121R1_048.ab1   724 
  751    UCW018F_A06_BE636795Ld09P014C06P014C121F1_048.ab1   751 
  761  C UCW018R_A06_BE636795Ld09P014C06P014C121R1_048.ab1   702 
  801    UCW018F_A06_BE636795Ld09P014C06P014C121F1_048.ab1   801 
  805  C UCW018R_A06_BE636795Ld09P014C06P014C121R1_048.ab1   658 
Contig length: old 1462, new 1462

Contig length: old 1462, new 1462
New start: 0