No. words: 1656; after pruning: 1630


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:1184)  453  0.00 0.00 0.00  UCW002F_A08_BE636795Tu01P002C06C121F1_053.ab1      371   841 (0)  C UCW002R_A08_BE636795Tu01P002C06C121R1_053.ab1   (0)   815   345 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1    UCW002F_A08_BE636795Tu01P002C06C121F1_053.ab1     1 
  466  C UCW002R_A08_BE636795Tu01P002C06C121R1_053.ab1   720 
  474    UCW002F_A08_BE636795Tu01P002C06C121F1_053.ab1   474 
  478  C UCW002R_A08_BE636795Tu01P002C06C121R1_053.ab1   708 
  482    UCW002F_A08_BE636795Tu01P002C06C121F1_053.ab1   482 
  498  C UCW002R_A08_BE636795Tu01P002C06C121R1_053.ab1   688 
  502    UCW002F_A08_BE636795Tu01P002C06C121F1_053.ab1   502 
  514  C UCW002R_A08_BE636795Tu01P002C06C121R1_053.ab1   672 
  530    UCW002F_A08_BE636795Tu01P002C06C121F1_053.ab1   530 
  534  C UCW002R_A08_BE636795Tu01P002C06C121R1_053.ab1   652 
  546    UCW002F_A08_BE636795Tu01P002C06C121F1_053.ab1   546 
  558  C UCW002R_A08_BE636795Tu01P002C06C121R1_053.ab1   628 
  574    UCW002F_A08_BE636795Tu01P002C06C121F1_053.ab1   574 
  582  C UCW002R_A08_BE636795Tu01P002C06C121R1_053.ab1   604 
Contig length: old 1185, new 1185

Contig length: old 1185, new 1185
New start: 0