No. words: 1658; after pruning: 1632


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:1144)  494  0.00 0.00 0.00  UCW002F_E08_BE636795Tu02P002C06C121F1_055.ab1      301   813 (0)  C UCW002R_E08_BE636795Tu02P002C06C121R1_055.ab1   (0)   845   333 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1    UCW002F_E08_BE636795Tu02P002C06C121F1_055.ab1     1 
  548  C UCW002R_E08_BE636795Tu02P002C06C121R1_055.ab1   598 
  552    UCW002F_E08_BE636795Tu02P002C06C121F1_055.ab1   552 
  564  C UCW002R_E08_BE636795Tu02P002C06C121R1_055.ab1   582 
  572    UCW002F_E08_BE636795Tu02P002C06C121F1_055.ab1   572 
  580  C UCW002R_E08_BE636795Tu02P002C06C121R1_055.ab1   566 
  584    UCW002F_E08_BE636795Tu02P002C06C121F1_055.ab1   584 
  604  C UCW002R_E08_BE636795Tu02P002C06C121R1_055.ab1   542 
Contig length: old 1145, new 1145

Contig length: old 1145, new 1145
New start: 0