No. words: 3422; after pruning: 3370


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:1164)  538  0.00 0.18 0.00  UCW030F_D08_BE636795Tu02P014C06P014C121F1_058.ab1      302   863 (0)  C UCW030R_D08_BE636795Tu02P014C06P014C121R1_058.ab1   (0)   865   303 *
Merge:(0)    0    0.0 8.6 (1,1:1265)  403  0.70 0.00 0.00  UCW018F_D06_BE636795Tu02P014C06P014C121F1_042.ab1      417   844 (0)  C UCW018R_D06_BE636795Tu02P014C06P014C121R1_042.ab1   (0)   850   423 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  280 nodes

 142 str. conn. components

Path
    1    UCW030F_D08_BE636795Tu02P014C06P014C121F1_058.ab1     1 
  517  C UCW030R_D08_BE636795Tu02P014C06P014C121R1_058.ab1   649 
  541    UCW030F_D08_BE636795Tu02P014C06P014C121F1_058.ab1   541 
  553  C UCW030R_D08_BE636795Tu02P014C06P014C121R1_058.ab1   613 
  581    UCW030F_D08_BE636795Tu02P014C06P014C121F1_058.ab1   581 
  585  C UCW030R_D08_BE636795Tu02P014C06P014C121R1_058.ab1   581 
  601    UCW030F_D08_BE636795Tu02P014C06P014C121F1_058.ab1   601 
  613  C UCW030R_D08_BE636795Tu02P014C06P014C121R1_058.ab1   553 
Contig length: old 1165, new 1165

Contig 1:  212 nodes

 108 str. conn. components

Path
    1    UCW018F_D06_BE636795Tu02P014C06P014C121F1_042.ab1     1 
  631  C UCW018R_D06_BE636795Tu02P014C06P014C121R1_042.ab1   636 
Contig length: old 1266, new 1266

Contig length: old 1165, new 1165
New start: 0 

Contig length: old 1266, new 1266
New start: 0