No. words: 1626; after pruning: 1600


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:960)  644  0.00 0.00 0.00  UCW002F_F02_BF201102As02P002G05G111F1_015.ab1      169   833 (0)  C UCW002R_F02_BF201102As02P002G05G111R1_015.ab1   (0)   793   129 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  334 nodes

 169 str. conn. components

Path
    1    UCW002F_F02_BF201102As02P002G05G111F1_015.ab1     1 
  444  C UCW002R_F02_BF201102As02P002G05G111R1_015.ab1   518 
  464    UCW002F_F02_BF201102As02P002G05G111F1_015.ab1   464 
  468  C UCW002R_F02_BF201102As02P002G05G111R1_015.ab1   494 
  476    UCW002F_F02_BF201102As02P002G05G111F1_015.ab1   476 
  492  C UCW002R_F02_BF201102As02P002G05G111R1_015.ab1   470 
  496    UCW002F_F02_BF201102As02P002G05G111F1_015.ab1   496 
  504  C UCW002R_F02_BF201102As02P002G05G111R1_015.ab1   458 
  516    UCW002F_F02_BF201102As02P002G05G111F1_015.ab1   516 
  520  C UCW002R_F02_BF201102As02P002G05G111R1_015.ab1   442 
  544    UCW002F_F02_BF201102As02P002G05G111F1_015.ab1   544 
  548  C UCW002R_F02_BF201102As02P002G05G111R1_015.ab1   414 
Contig length: old 961, new 961

Contig length: old 961, new 961
New start: 0