No. words: 1625; after pruning: 1599


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.3 (1,1:935)  666  0.00 0.00 0.00  UCW002F_C02_BF201102At01P002G05G111F1_006.ab1      139   827 (0)  C UCW002R_C02_BF201102At01P002G05G111R1_006.ab1   (0)   798   110 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1    UCW002F_C02_BF201102At01P002G05G111F1_006.ab1     1 
  446  C UCW002R_C02_BF201102At01P002G05G111R1_006.ab1   491 
  450    UCW002F_C02_BF201102At01P002G05G111F1_006.ab1   450 
  462  C UCW002R_C02_BF201102At01P002G05G111R1_006.ab1   475 
  466    UCW002F_C02_BF201102At01P002G05G111F1_006.ab1   466 
  470  C UCW002R_C02_BF201102At01P002G05G111R1_006.ab1   467 
  474    UCW002F_C02_BF201102At01P002G05G111F1_006.ab1   474 
  482  C UCW002R_C02_BF201102At01P002G05G111R1_006.ab1   455 
  534    UCW002F_C02_BF201102At01P002G05G111F1_006.ab1   534 
  538  C UCW002R_C02_BF201102At01P002G05G111R1_006.ab1   399 
  546    UCW002F_C02_BF201102At01P002G05G111F1_006.ab1   546 
  558  C UCW002R_C02_BF201102At01P002G05G111R1_006.ab1   379 
Contig length: old 936, new 936

Contig length: old 936, new 936
New start: 0