No. words: 1686; after pruning: 1660


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.3 (1,1:996)  667  0.00 0.00 0.00  UCW002F_D01_BF201102Ld04P002G05G111F1_010.ab1      179   867 (0)  C UCW002R_D01_BF201102Ld04P002G05G111R1_010.ab1   (0)   819   131 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1    UCW002F_D01_BF201102Ld04P002G05G111F1_010.ab1     1 
  430  C UCW002R_D01_BF201102Ld04P002G05G111R1_010.ab1   568 
  434    UCW002F_D01_BF201102Ld04P002G05G111F1_010.ab1   434 
  462  C UCW002R_D01_BF201102Ld04P002G05G111R1_010.ab1   536 
  466    UCW002F_D01_BF201102Ld04P002G05G111F1_010.ab1   466 
  490  C UCW002R_D01_BF201102Ld04P002G05G111R1_010.ab1   508 
  502    UCW002F_D01_BF201102Ld04P002G05G111F1_010.ab1   502 
  518  C UCW002R_D01_BF201102Ld04P002G05G111R1_010.ab1   480 
  522    UCW002F_D01_BF201102Ld04P002G05G111F1_010.ab1   522 
  534  C UCW002R_D01_BF201102Ld04P002G05G111R1_010.ab1   464 
Contig length: old 997, new 997

Contig length: old 997, new 997
New start: 0