No. words: 1665; after pruning: 1639


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:1047)  593  0.16 0.00 0.00  UCW002F_E01_BF201102Ld05P002G05G111F1_003.ab1      194   810 (0)  C UCW002R_E01_BF201102Ld05P002G05G111R1_003.ab1   (0)   855   239 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1    UCW002F_E01_BF201102Ld05P002G05G111F1_003.ab1     1 
  463  C UCW002R_E01_BF201102Ld05P002G05G111R1_003.ab1   586 
  471    UCW002F_E01_BF201102Ld05P002G05G111F1_003.ab1   471 
  479  C UCW002R_E01_BF201102Ld05P002G05G111R1_003.ab1   570 
  483    UCW002F_E01_BF201102Ld05P002G05G111F1_003.ab1   483 
  503  C UCW002R_E01_BF201102Ld05P002G05G111R1_003.ab1   546 
  519    UCW002F_E01_BF201102Ld05P002G05G111F1_003.ab1   519 
  527  C UCW002R_E01_BF201102Ld05P002G05G111R1_003.ab1   522 
  543    UCW002F_E01_BF201102Ld05P002G05G111F1_003.ab1   543 
  547  C UCW002R_E01_BF201102Ld05P002G05G111R1_003.ab1   502 
  715    UCW002F_E01_BF201102Ld05P002G05G111F1_003.ab1   715 
  719  C UCW002R_E01_BF201102Ld05P002G05G111R1_003.ab1   330 
Contig length: old 1048, new 1048

Contig length: old 1048, new 1048
New start: 0