No. words: 1626; after pruning: 1586


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:1006)  582  0.48 0.16 0.16  UCW002F_F01_BF201102Ld06P002G05G111F1_011.ab1      214   832 (0)  C UCW002R_F01_BF201102Ld06P002G05G111R1_011.ab1   (0)   794   176 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1    UCW002F_F01_BF201102Ld06P002G05G111F1_011.ab1     1 
  489  C UCW002R_F01_BF201102Ld06P002G05G111R1_011.ab1   519 
  497    UCW002F_F01_BF201102Ld06P002G05G111F1_011.ab1   497 
  501  C UCW002R_F01_BF201102Ld06P002G05G111R1_011.ab1   507 
  517    UCW002F_F01_BF201102Ld06P002G05G111F1_011.ab1   517 
  533  C UCW002R_F01_BF201102Ld06P002G05G111R1_011.ab1   475 
  545    UCW002F_F01_BF201102Ld06P002G05G111F1_011.ab1   545 
  549  C UCW002R_F01_BF201102Ld06P002G05G111R1_011.ab1   459 
  577    UCW002F_F01_BF201102Ld06P002G05G111F1_011.ab1   577 
  581  C UCW002R_F01_BF201102Ld06P002G05G111R1_011.ab1   427 
Contig length: old 1007, new 1007

Contig length: old 1007, new 1007
New start: 0