No. words: 1421; after pruning: 1395


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.2 (1,1:994)  371  3.05 0.00 0.00  UCW002F_G01_BF201102Ld07P002G05G111F1_004.ab1      341   766 (0)  C UCW002R_G01_BF201102Ld07P002G05G111R1_004.ab1   (0)   655   230 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  182 nodes

 93 str. conn. components

Path
    1    UCW002F_G01_BF201102Ld07P002G05G111F1_004.ab1     1 
  614  C UCW002R_G01_BF201102Ld07P002G05G111R1_004.ab1   382 
  643    UCW002F_G01_BF201102Ld07P002G05G111F1_004.ab1   643 
  655  C UCW002R_G01_BF201102Ld07P002G05G111R1_004.ab1   341 
  667    UCW002F_G01_BF201102Ld07P002G05G111F1_004.ab1   667 
  679  C UCW002R_G01_BF201102Ld07P002G05G111R1_004.ab1   317 
Contig length: old 995, new 995

Contig length: old 995, new 995
New start: 0 
S Change at: 726; seg lengths: entry 1, contig 1