No. words: 1556; after pruning: 1516


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.4 (1,1:1005)  526  0.18 0.00 0.18  UCW002F_H01_BF201102Ld08P002G05G111F1_012.ab1      204   752 (0)  C UCW002R_H01_BF201102Ld08P002G05G111R1_012.ab1   (1)   803   256 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1    UCW002F_H01_BF201102Ld08P002G05G111F1_012.ab1     1 
  515  C UCW002R_H01_BF201102Ld08P002G05G111R1_012.ab1   493 
  523    UCW002F_H01_BF201102Ld08P002G05G111F1_012.ab1   523 
  531  C UCW002R_H01_BF201102Ld08P002G05G111R1_012.ab1   477 
  543    UCW002F_H01_BF201102Ld08P002G05G111F1_012.ab1   543 
  547  C UCW002R_H01_BF201102Ld08P002G05G111R1_012.ab1   461 
Contig length: old 1006, new 1007

Contig length: old 1007, new 1007
New start: 0