No. words: 1657; after pruning: 1631


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:894)  724  0.39 0.13 0.00  UCW039a_A12_BF201102Sn26P001G05P022E071R1_096.ab1      112   872 (0)  C UCW040a_A12_BF201102Sn26P001G05P022E071F1_096.ab1   (0)   785    24 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1    UCW039a_A12_BF201102Sn26P001G05P022E071R1_096.ab1     1 
  563  C UCW040a_A12_BF201102Sn26P001G05P022E071F1_096.ab1   334 
  567    UCW039a_A12_BF201102Sn26P001G05P022E071R1_096.ab1   567 
  615  C UCW040a_A12_BF201102Sn26P001G05P022E071F1_096.ab1   282 
  631    UCW039a_A12_BF201102Sn26P001G05P022E071R1_096.ab1   631 
  635  C UCW040a_A12_BF201102Sn26P001G05P022E071F1_096.ab1   262 
  643    UCW039a_A12_BF201102Sn26P001G05P022E071R1_096.ab1   643 
  647  C UCW040a_A12_BF201102Sn26P001G05P022E071F1_096.ab1   250 
Contig length: old 895, new 896

Contig length: old 896, new 895
New start: 0 
D Change at: 857; seg lengths: entry 2, contig 3