No. words: 1246; after pruning: 1220


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:908)  310  0.59 0.00 0.30  UCW039a_B12_BF201102Sn27P001G05P022E071R1_094.ab1      194   530 (0)  C UCW040a_B12_BF201102Sn27P001G05P022E071F1_094.ab1   (0)   716   381 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  162 nodes

 83 str. conn. components

Path
    1    UCW039a_B12_BF201102Sn27P001G05P022E071R1_094.ab1     1 
  349  C UCW040a_B12_BF201102Sn27P001G05P022E071F1_094.ab1   561 
  353    UCW039a_B12_BF201102Sn27P001G05P022E071R1_094.ab1   353 
  393  C UCW040a_B12_BF201102Sn27P001G05P022E071F1_094.ab1   517 
Contig length: old 909, new 909

Contig length: old 909, new 909
New start: 0