No. words: 1766; after pruning: 1740


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.4 (1,1:908)  788  0.00 0.00 0.00  UCW039a_C12_BF201102Sn28P001G05P022E071R1_092.ab1        2   820 (0)  C UCW040a_C12_BF201102Sn28P001G05P022E071F1_092.ab1   (38)   908    90 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  412 nodes

 208 str. conn. components

Path
    1  C UCW040a_C12_BF201102Sn28P001G05P022E071F1_092.ab1   946 
   42    UCW039a_C12_BF201102Sn28P001G05P022E071R1_092.ab1     5 
  686  C UCW040a_C12_BF201102Sn28P001G05P022E071F1_092.ab1   261 
Contig length: old 946, new 946

Contig length: old 946, new 946
New start: 0