No. words: 1587; after pruning: 1561


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.4 (1,1:872)  678  0.56 0.00 0.00  UCW039a_D12_BF201102Sn29P001G05P022E071R1_090.ab1      101   814 (0)  C UCW040a_D12_BF201102Sn29P001G05P022E071F1_090.ab1   (0)   773    60 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1    UCW039a_D12_BF201102Sn29P001G05P022E071R1_090.ab1     1 
  440  C UCW040a_D12_BF201102Sn29P001G05P022E071F1_090.ab1   434 
  444    UCW039a_D12_BF201102Sn29P001G05P022E071R1_090.ab1   444 
  448  C UCW040a_D12_BF201102Sn29P001G05P022E071F1_090.ab1   426 
  452    UCW039a_D12_BF201102Sn29P001G05P022E071R1_090.ab1   452 
  464  C UCW040a_D12_BF201102Sn29P001G05P022E071F1_090.ab1   410 
  468    UCW039a_D12_BF201102Sn29P001G05P022E071R1_090.ab1   468 
  520  C UCW040a_D12_BF201102Sn29P001G05P022E071F1_090.ab1   354 
  532    UCW039a_D12_BF201102Sn29P001G05P022E071R1_090.ab1   532 
  556  C UCW040a_D12_BF201102Sn29P001G05P022E071F1_090.ab1   318 
  560    UCW039a_D12_BF201102Sn29P001G05P022E071R1_090.ab1   560 
  568  C UCW040a_D12_BF201102Sn29P001G05P022E071F1_090.ab1   306 
  580    UCW039a_D12_BF201102Sn29P001G05P022E071R1_090.ab1   580 
  600  C UCW040a_D12_BF201102Sn29P001G05P022E071F1_090.ab1   274 
  620    UCW039a_D12_BF201102Sn29P001G05P022E071R1_090.ab1   620 
  628  C UCW040a_D12_BF201102Sn29P001G05P022E071F1_090.ab1   246 
  640    UCW039a_D12_BF201102Sn29P001G05P022E071R1_090.ab1   640 
  656  C UCW040a_D12_BF201102Sn29P001G05P022E071F1_090.ab1   218 
  660    UCW039a_D12_BF201102Sn29P001G05P022E071R1_090.ab1   660 
  676  C UCW040a_D12_BF201102Sn29P001G05P022E071F1_090.ab1   198 
  786    UCW039a_D12_BF201102Sn29P001G05P022E071R1_090.ab1   786 
  799  C UCW040a_D12_BF201102Sn29P001G05P022E071F1_090.ab1    75 
Contig length: old 873, new 873

Contig length: old 873, new 873
New start: 0