No. words: 1569; after pruning: 1543


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:896)  649  0.00 0.00 0.00  UCW039a_C10_BF201102Ta13P001G05P022E071R1_076.ab1       96   767 (0)  C UCW040a_C10_BF201102Ta13P001G05P022E071F1_076.ab1   (0)   802   131 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1    UCW039a_C10_BF201102Ta13P001G05P022E071R1_076.ab1     1 
  407  C UCW040a_C10_BF201102Ta13P001G05P022E071F1_076.ab1   491 
  415    UCW039a_C10_BF201102Ta13P001G05P022E071R1_076.ab1   415 
  471  C UCW040a_C10_BF201102Ta13P001G05P022E071F1_076.ab1   427 
  475    UCW039a_C10_BF201102Ta13P001G05P022E071R1_076.ab1   475 
  511  C UCW040a_C10_BF201102Ta13P001G05P022E071F1_076.ab1   387 
  571    UCW039a_C10_BF201102Ta13P001G05P022E071R1_076.ab1   571 
  583  C UCW040a_C10_BF201102Ta13P001G05P022E071F1_076.ab1   315 
Contig length: old 897, new 897

Contig length: old 897, new 897
New start: 0