No. words: 1086; after pruning: 1060


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.6 (1,1:785)  239  0.00 0.78 0.00  UCW051_F08_BF201102Ta14P001G05P022C071R1_054.ab1        1   255 (0)  C UCW052_F08_BF201102Ta14P001G05P022C071F1_054.ab1   (44)   787   531 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  124 nodes

 64 str. conn. components

Path
    1  C UCW052_F08_BF201102Ta14P001G05P022C071F1_054.ab1   831 
   59    UCW051_F08_BF201102Ta14P001G05P022C071R1_054.ab1    14 
   71  C UCW052_F08_BF201102Ta14P001G05P022C071F1_054.ab1   761 
   97    UCW051_F08_BF201102Ta14P001G05P022C071R1_054.ab1    51 
  125  C UCW052_F08_BF201102Ta14P001G05P022C071F1_054.ab1   707 
  133    UCW051_F08_BF201102Ta14P001G05P022C071R1_054.ab1    87 
  137  C UCW052_F08_BF201102Ta14P001G05P022C071F1_054.ab1   695 
  141    UCW051_F08_BF201102Ta14P001G05P022C071R1_054.ab1    95 
  153  C UCW052_F08_BF201102Ta14P001G05P022C071F1_054.ab1   679 
Contig length: old 831, new 831

Contig length: old 831, new 831
New start: 0