No. words: 1403; after pruning: 1377


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:885)  475  0.77 0.00 0.19  UCW039a_D10_BF201102Ta14P001G05P022E071R1_074.ab1      160   676 (0)  C UCW040a_D10_BF201102Ta14P001G05P022E071F1_074.ab1   (0)   727   212 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1    UCW039a_D10_BF201102Ta14P001G05P022E071R1_074.ab1     1 
  335  C UCW040a_D10_BF201102Ta14P001G05P022E071F1_074.ab1   552 
  347    UCW039a_D10_BF201102Ta14P001G05P022E071R1_074.ab1   347 
  351  C UCW040a_D10_BF201102Ta14P001G05P022E071F1_074.ab1   536 
  355    UCW039a_D10_BF201102Ta14P001G05P022E071R1_074.ab1   355 
  379  C UCW040a_D10_BF201102Ta14P001G05P022E071F1_074.ab1   508 
  407    UCW039a_D10_BF201102Ta14P001G05P022E071R1_074.ab1   407 
  411  C UCW040a_D10_BF201102Ta14P001G05P022E071F1_074.ab1   476 
  423    UCW039a_D10_BF201102Ta14P001G05P022E071R1_074.ab1   423 
  427  C UCW040a_D10_BF201102Ta14P001G05P022E071F1_074.ab1   460 
Contig length: old 886, new 886

Contig length: old 886, new 886
New start: 0