No. words: 1437; after pruning: 1411


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:770)  598  0.00 0.16 0.00  UCW051_G08_BF201102Ta15P001G05P022C071R1_052.ab1        1   620 (0)  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   (45)   772   152 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   817 
   59    UCW051_G08_BF201102Ta15P001G05P022C071R1_052.ab1    13 
  103  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   715 
  107    UCW051_G08_BF201102Ta15P001G05P022C071R1_052.ab1    61 
  143  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   675 
  147    UCW051_G08_BF201102Ta15P001G05P022C071R1_052.ab1   101 
  155  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   663 
  159    UCW051_G08_BF201102Ta15P001G05P022C071R1_052.ab1   113 
  191  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   627 
  195    UCW051_G08_BF201102Ta15P001G05P022C071R1_052.ab1   149 
  211  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   607 
  219    UCW051_G08_BF201102Ta15P001G05P022C071R1_052.ab1   173 
  235  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   583 
  247    UCW051_G08_BF201102Ta15P001G05P022C071R1_052.ab1   201 
  259  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   559 
  267    UCW051_G08_BF201102Ta15P001G05P022C071R1_052.ab1   221 
  271  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   547 
  327    UCW051_G08_BF201102Ta15P001G05P022C071R1_052.ab1   281 
  331  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   487 
  391    UCW051_G08_BF201102Ta15P001G05P022C071R1_052.ab1   345 
  395  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   423 
  499    UCW051_G08_BF201102Ta15P001G05P022C071R1_052.ab1   453 
  503  C UCW052_G08_BF201102Ta15P001G05P022C071F1_052.ab1   315 
Contig length: old 817, new 817

Contig length: old 817, new 817
New start: 0