No. words: 1099; after pruning: 1073


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.0 (1,1:684)  214  7.28 0.33 0.00  UCW051_A09_BF201102Ta17P001G05P022C071R1_079.ab1        1   302 (0)  C UCW052_A09_BF201102Ta17P001G05P022C071F1_079.ab1   (112)   685   383 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1  C UCW052_A09_BF201102Ta17P001G05P022C071F1_079.ab1   797 
  127    UCW051_A09_BF201102Ta17P001G05P022C071R1_079.ab1    15 
  131  C UCW052_A09_BF201102Ta17P001G05P022C071F1_079.ab1   667 
  135    UCW051_A09_BF201102Ta17P001G05P022C071R1_079.ab1    23 
  143  C UCW052_A09_BF201102Ta17P001G05P022C071F1_079.ab1   655 
Contig length: old 797, new 797

Contig length: old 797, new 797
New start: 0