No. words: 1258; after pruning: 1232


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:887)  333  1.62 0.00 0.00  UCW039a_B11_BF201102Ta20P001G05P022E071R1_093.ab1      339   708 (0)  C UCW040a_B11_BF201102Ta20P001G05P022E071F1_093.ab1   (0)   550   181 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1    UCW039a_B11_BF201102Ta20P001G05P022E071R1_093.ab1     1 
  535  C UCW040a_B11_BF201102Ta20P001G05P022E071F1_093.ab1   354 
  539    UCW039a_B11_BF201102Ta20P001G05P022E071R1_093.ab1   539 
  583  C UCW040a_B11_BF201102Ta20P001G05P022E071F1_093.ab1   306 
  603    UCW039a_B11_BF201102Ta20P001G05P022E071R1_093.ab1   603 
  607  C UCW040a_B11_BF201102Ta20P001G05P022E071F1_093.ab1   282 
  611    UCW039a_B11_BF201102Ta20P001G05P022E071R1_093.ab1   611 
  615  C UCW040a_B11_BF201102Ta20P001G05P022E071F1_093.ab1   274 
  647    UCW039a_B11_BF201102Ta20P001G05P022E071R1_093.ab1   647 
  651  C UCW040a_B11_BF201102Ta20P001G05P022E071F1_093.ab1   238 
  659    UCW039a_B11_BF201102Ta20P001G05P022E071R1_093.ab1   659 
  663  C UCW040a_B11_BF201102Ta20P001G05P022E071F1_093.ab1   226 
  671    UCW039a_B11_BF201102Ta20P001G05P022E071R1_093.ab1   671 
  675  C UCW040a_B11_BF201102Ta20P001G05P022E071F1_093.ab1   214 
  679    UCW039a_B11_BF201102Ta20P001G05P022E071R1_093.ab1   679 
  687  C UCW040a_B11_BF201102Ta20P001G05P022E071F1_093.ab1   202 
Contig length: old 888, new 888

Contig length: old 888, new 888
New start: 0