No. words: 1281; after pruning: 1255


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:892)  361  0.77 0.00 0.00  UCW039a_C11_BF201102Ta21P001G05P022E071R1_091.ab1      104   491 (0)  C UCW040a_C11_BF201102Ta21P001G05P022E071F1_091.ab1   (0)   790   403 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1    UCW039a_C11_BF201102Ta21P001G05P022E071R1_091.ab1     1 
  179  C UCW040a_C11_BF201102Ta21P001G05P022E071F1_091.ab1   715 
  183    UCW039a_C11_BF201102Ta21P001G05P022E071R1_091.ab1   183 
  203  C UCW040a_C11_BF201102Ta21P001G05P022E071F1_091.ab1   691 
  207    UCW039a_C11_BF201102Ta21P001G05P022E071R1_091.ab1   207 
  223  C UCW040a_C11_BF201102Ta21P001G05P022E071F1_091.ab1   671 
  235    UCW039a_C11_BF201102Ta21P001G05P022E071R1_091.ab1   235 
  251  C UCW040a_C11_BF201102Ta21P001G05P022E071F1_091.ab1   643 
  263    UCW039a_C11_BF201102Ta21P001G05P022E071R1_091.ab1   263 
  267  C UCW040a_C11_BF201102Ta21P001G05P022E071F1_091.ab1   627 
  279    UCW039a_C11_BF201102Ta21P001G05P022E071R1_091.ab1   279 
  283  C UCW040a_C11_BF201102Ta21P001G05P022E071F1_091.ab1   611 
  295    UCW039a_C11_BF201102Ta21P001G05P022E071R1_091.ab1   295 
  299  C UCW040a_C11_BF201102Ta21P001G05P022E071F1_091.ab1   595 
Contig length: old 893, new 893

Contig length: old 893, new 893
New start: 0