No. words: 1643; after pruning: 1617


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.1 (1,1:774)  749  0.13 0.00 0.13  UCW051_F09_BF201102Ta22P001G05P022C071R1_069.ab1        1   775 (43)  C UCW052_F09_BF201102Ta22P001G05P022C071F1_069.ab1   (51)   774     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  384 nodes

 194 str. conn. components

Path
    1  C UCW052_F09_BF201102Ta22P001G05P022C071F1_069.ab1   825 
   61    UCW051_F09_BF201102Ta22P001G05P022C071R1_069.ab1    10 
   81  C UCW052_F09_BF201102Ta22P001G05P022C071F1_069.ab1   745 
   85    UCW051_F09_BF201102Ta22P001G05P022C071R1_069.ab1    34 
  137  C UCW052_F09_BF201102Ta22P001G05P022C071F1_069.ab1   689 
  145    UCW051_F09_BF201102Ta22P001G05P022C071R1_069.ab1    94 
  149  C UCW052_F09_BF201102Ta22P001G05P022C071F1_069.ab1   677 
  157    UCW051_F09_BF201102Ta22P001G05P022C071R1_069.ab1   106 
  165  C UCW052_F09_BF201102Ta22P001G05P022C071F1_069.ab1   661 
  177    UCW051_F09_BF201102Ta22P001G05P022C071R1_069.ab1   126 
  181  C UCW052_F09_BF201102Ta22P001G05P022C071F1_069.ab1   645 
  213    UCW051_F09_BF201102Ta22P001G05P022C071R1_069.ab1   162 
  221  C UCW052_F09_BF201102Ta22P001G05P022C071F1_069.ab1   605 
  229    UCW051_F09_BF201102Ta22P001G05P022C071R1_069.ab1   178 
  233  C UCW052_F09_BF201102Ta22P001G05P022C071F1_069.ab1   593 
  377    UCW051_F09_BF201102Ta22P001G05P022C071R1_069.ab1   326 
  381  C UCW052_F09_BF201102Ta22P001G05P022C071F1_069.ab1   445 
  809    UCW051_F09_BF201102Ta22P001G05P022C071R1_069.ab1   759 
  813  C UCW052_F09_BF201102Ta22P001G05P022C071F1_069.ab1    13 
  821    UCW051_F09_BF201102Ta22P001G05P022C071R1_069.ab1   771 
Contig length: old 868, new 868

Contig length: old 868, new 868
New start: 0