No. words: 1649; after pruning: 1623


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.0 (1,1:771)  748  0.00 0.00 0.13  UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1        1   772 (49)  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   (57)   771     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  384 nodes

 194 str. conn. components

Path
    1  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   828 
   65    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1     8 
   73  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   756 
   77    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1    20 
   81  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   748 
   89    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1    32 
  101  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   728 
  105    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1    48 
  113  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   716 
  117    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1    60 
  141  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   688 
  145    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1    88 
  165  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   664 
  169    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1   112 
  177  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   652 
  185    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1   128 
  193  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   636 
  209    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1   152 
  221  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   608 
  261    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1   204 
  269  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   560 
  709    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1   652 
  717  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1   112 
  733    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1   676 
  737  C UCW052_G09_BF201102Ta23P001G05P022C071F1_067.ab1    92 
  822    UCW051_G09_BF201102Ta23P001G05P022C071R1_067.ab1   766 
Contig length: old 877, new 877

Contig length: old 877, new 877
New start: 0