No. words: 1146; after pruning: 1120


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.9 (1,1:905)  225  1.25 0.00 0.00  UCW039a_E11_BF201102Ta23P001G05P022E071R1_087.ab1      127   366 (0)  C UCW040a_E11_BF201102Ta23P001G05P022E071F1_087.ab1   (0)   780   541 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  118 nodes

 61 str. conn. components

Path
    1    UCW039a_E11_BF201102Ta23P001G05P022E071R1_087.ab1     1 
  255  C UCW040a_E11_BF201102Ta23P001G05P022E071F1_087.ab1   652 
  263    UCW039a_E11_BF201102Ta23P001G05P022E071R1_087.ab1   263 
  267  C UCW040a_E11_BF201102Ta23P001G05P022E071F1_087.ab1   640 
  275    UCW039a_E11_BF201102Ta23P001G05P022E071R1_087.ab1   275 
  279  C UCW040a_E11_BF201102Ta23P001G05P022E071F1_087.ab1   628 
Contig length: old 906, new 906

Contig length: old 906, new 906
New start: 0