No. words: 1253; after pruning: 1227


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.7 (1,1:777)  380  0.74 0.25 0.00  UCW051_A07_BF201102Td01P001G05P022C071R1_063.ab1        1   408 (1)  C UCW052_A07_BF201102Td01P001G05P022C071F1_063.ab1   (65)   779   371 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  192 nodes

 98 str. conn. components

Path
    1  C UCW052_A07_BF201102Td01P001G05P022C071F1_063.ab1   844 
   75    UCW051_A07_BF201102Td01P001G05P022C071R1_063.ab1    10 
   83  C UCW052_A07_BF201102Td01P001G05P022C071F1_063.ab1   762 
   94    UCW051_A07_BF201102Td01P001G05P022C071R1_063.ab1    28 
   98  C UCW052_A07_BF201102Td01P001G05P022C071F1_063.ab1   747 
  106    UCW051_A07_BF201102Td01P001G05P022C071R1_063.ab1    40 
  114  C UCW052_A07_BF201102Td01P001G05P022C071F1_063.ab1   731 
  118    UCW051_A07_BF201102Td01P001G05P022C071R1_063.ab1    52 
  142  C UCW052_A07_BF201102Td01P001G05P022C071F1_063.ab1   703 
Contig length: old 844, new 844

Contig length: old 844, new 844
New start: 0