No. words: 1461; after pruning: 1435


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:776)  625  0.46 0.15 0.00  UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1        1   658 (0)  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   (25)   778   120 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   803 
   51    UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1    25 
  142  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   662 
  146    UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1   120 
  270  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   534 
  274    UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1   248 
  278  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   526 
  282    UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1   256 
  294  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   510 
  378    UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1   352 
  382  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   422 
  402    UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1   376 
  438  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   366 
  442    UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1   416 
  454  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   350 
  470    UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1   444 
  486  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   318 
  510    UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1   484 
  522  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   282 
  530    UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1   504 
  534  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   270 
  554    UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1   528 
  558  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   246 
  602    UCW051_D07_BF201102Td04P001G05P022C071R1_057.ab1   576 
  610  C UCW052_D07_BF201102Td04P001G05P022C071F1_057.ab1   194 
Contig length: old 803, new 803

Contig length: old 803, new 803
New start: 0