No. words: 1061; after pruning: 1035


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.1 (1,1:724)  296  2.68 0.00 0.00  UCW051_F07_BF201102Td06P001G05P022C071R1_053.ab1       67   402 (0)  C UCW052_F07_BF201102Td06P001G05P022C071F1_053.ab1   (0)   659   324 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  140 nodes

 72 str. conn. components

Path
    1    UCW051_F07_BF201102Td06P001G05P022C071R1_053.ab1     1 
  104  C UCW052_F07_BF201102Td06P001G05P022C071F1_053.ab1   622 
  108    UCW051_F07_BF201102Td06P001G05P022C071R1_053.ab1   108 
  116  C UCW052_F07_BF201102Td06P001G05P022C071F1_053.ab1   610 
  120    UCW051_F07_BF201102Td06P001G05P022C071R1_053.ab1   120 
  132  C UCW052_F07_BF201102Td06P001G05P022C071F1_053.ab1   594 
  152    UCW051_F07_BF201102Td06P001G05P022C071R1_053.ab1   152 
  156  C UCW052_F07_BF201102Td06P001G05P022C071F1_053.ab1   570 
  160    UCW051_F07_BF201102Td06P001G05P022C071R1_053.ab1   160 
  164  C UCW052_F07_BF201102Td06P001G05P022C071F1_053.ab1   562 
Contig length: old 725, new 725

Contig length: old 725, new 725
New start: 0 
S Change at: 79; seg lengths: entry 3, contig 3
S Change at: 88; seg lengths: entry 1, contig 1